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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98767181_98767430_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
98767181 - 98767430
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCAATGGTTCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCTTTCTCACCT
Flanking Amino Acid:
TDIEVVREATAALQSIFPQT
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
57.2
0.16
1.1
46.4
45.6
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
53.9
0.2
1.9
72.31
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009592
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009981
98762547 - 98776719
14173