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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98767590_98768517_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98767590 - 98768517
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CCTATACAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCATCCTATACA
Flanking Amino Acid:
CGNGGKGIDDLPAILNEVLP
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
61.3
0.25
1
55.4
38.2
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
55.4
0.16
2
67.92
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009592
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009981
98762547 - 98776719
14173