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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98768727_98769688_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98768727 - 98769688
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGACAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TACTTCTTACCT
Flanking Amino Acid:
QYEAFLCILMSDAITGAQEV
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
65.7
35.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
26
-2.8
2.9
27.1
37.5
Minor BPS
67.5
0.63
1.6
80.35
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009592
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009981
98762547 - 98776719
14173