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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98769809_98772004_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98769809 - 98772004
Intron Length:
2196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
KVSVDTKDVFPLFVAICNVW
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009592
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009981
98762547 - 98776719
14173