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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98773073_98775062_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98773073 - 98775062
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTGTTAGTG
Flanking Amino Acid:
AIGVKGLTLPGNPAIGILKH
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.1
37.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.6
0.67
0.8
73.8
36.8
Minor 5ss
59.1
0.31
2.3
74.3
42
Minor BPS
48.2
-0.2
2.2
60.91
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009592
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009981
98762547 - 98776719
14173