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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98789287_98789684_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98789287 - 98789684
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCATGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
ATCCGTTTAACA
Flanking Amino Acid:
WEPAQATKVQVEQNPWLGFV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
74.7
0.56
0.9
68.1
37.2
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
57.3
0.23
1.8
66.76
39.9

Associated Gene:

Gene:
SLC35A1
Ensembl Gene ID:
ENSAPLG00000009332
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009751
98788714 - 98795385
6672