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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98789752_98793262_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98789752 - 98793262
Intron Length:
3511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTCATCTTATAA
Flanking Amino Acid:
AVAVLCSGFAGVYFEKVLKS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
78.6
0.71
1
78.6
31
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
52.2
0.07
1.7
64.8
41.5

Associated Gene:

Gene:
SLC35A1
Ensembl Gene ID:
ENSAPLG00000009332
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009751
98788714 - 98795385
6672