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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98793963_98795254_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98793963 - 98795254
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATTTTGAACT
Flanking Amino Acid:
ASVILFGLQLTTTFLVGAIL
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82
0.72
0.8
76.9
31.7
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
71.3
0.75
1.3
85.31
34.6

Associated Gene:

Gene:
SLC35A1
Ensembl Gene ID:
ENSAPLG00000009332
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009751
98788714 - 98795385
6672