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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98800904_98801461_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98800904 - 98801461
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTCTTGATT
Flanking Amino Acid:
FLQYTHARLHSLEQMHGNEQ
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
77.2
0.61
0.8
74.5
35
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
69.4
0.69
1.2
77.73
39.7

Associated Gene:

Gene:
RARS2
Ensembl Gene ID:
ENSAPLG00000009188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009580
98796726 - 98828294
31569