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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98806765_98810512_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98806765 - 98810512
Intron Length:
3748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTTCTATTATG
Flanking Amino Acid:
KHSCDTMIYVTDKSQSSHFQ
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
53.4
-0
2
68.08
39.7

Associated Gene:

Gene:
RARS2
Ensembl Gene ID:
ENSAPLG00000009188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009580
98796726 - 98828294
31569