Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98810574_98811973_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

98810574 - 98811973

Intron Length:

1400

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

CTATGTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

AGTTTCTTACTA

Flanking Amino Acid:

RSDGTSLYITRDLAAAIDRM

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.4

1.14

0.7

81.8

38.5

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

80.4

0.68

0.9

77.1

36.9

Minor 5ss

24.8

-2.9

3.6

32.5

42.4

Minor BPS

62.4

0.39

1.6

69.84

36.7

Associated Gene:

Gene:

RARS2

Ensembl Gene ID:

ENSAPLG00000009188

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009580

98796726 - 98828294

31569