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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98812070_98812666_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98812070 - 98812666
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGACCT
5'SS Class:
major
3'SS Sequence:
TCTCATCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTACTTTAGCC
Flanking Amino Acid:
LEDKGLLQKTIKGTGVVDLS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63.7
40.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.7
0.73
0.8
76.1
32.2
Minor 5ss
43.1
-0.8
3.1
62.6
41.7
Minor BPS
68.8
0.57
1.6
79.16
36.1

Associated Gene:

Gene:
RARS2
Ensembl Gene ID:
ENSAPLG00000009188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009580
98796726 - 98828294
31569