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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98814839_98817941_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98814839 - 98817941
Intron Length:
3103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CATTATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATTTCTTCAACA
Flanking Amino Acid:
KSSPLQHLFEVYVQINKAAE
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
73.9
0.54
0.9
70.9
39.1
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
74.1
0.75
1.4
82.18
32.4

Associated Gene:

Gene:
RARS2
Ensembl Gene ID:
ENSAPLG00000009188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009580
98796726 - 98828294
31569