Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98818019_98821673_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

98818019 - 98821673

Intron Length:

3655

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTTTT

5'SS Class:

strong_major

3'SS Sequence:

ATTGTTTTTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

CTGTATTTAATT

Flanking Amino Acid:

NYLGDWGMQFGLLGVGFQQF

Intron Amino Acid Position:

124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

82.3

31.1

Major BPS

90.7

1.01

0.7

19.9

Major PPT

74.1

0.54

1.1

42.4

Minor 5ss

58.3

0.28

2.3

72.3

Minor BPS

0.55

1.5

76.19

41.2

Associated Gene:

Gene:

RARS2

Ensembl Gene ID:

ENSAPLG00000009188

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009580

98796726 - 98828294

31569