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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98823358_98824689_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98823358 - 98824689
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
AAATTTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
GTACATTGAACA
Flanking Amino Acid:
VPRQKAVIEFSSPNIAKKFH
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
72.9
0.52
1
66.2
44.1
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
49.6
-0
1.6
61.02
38

Associated Gene:

Gene:
RARS2
Ensembl Gene ID:
ENSAPLG00000009188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009580
98796726 - 98828294
31569