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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98824788_98828070_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98824788 - 98828070
Intron Length:
3283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CCCTATGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTTCATT
Flanking Amino Acid:
FTINRELLAKTVLQQVLKDG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.2
0.41
0.9
65.1
36
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
79.8
1.02
1.6
95.75
31

Associated Gene:

Gene:
RARS2
Ensembl Gene ID:
ENSAPLG00000009188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009580
98796726 - 98828294
31569