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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98828155_98828246_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
98828155 - 98828246
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGGATTAA
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTCTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTCTTATAG
Flanking Amino Acid:
QSDKNHLIFILKCDAVVSEI
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.4
0.13
1
56
32.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.5
0.8
0.7
80.8
31.3
Minor 5ss
33.9
-1.8
3.2
39.9
41.9
Minor BPS
56.8
0.07
1.8
63.99
43.9

Associated Gene:

Gene:
RARS2
Ensembl Gene ID:
ENSAPLG00000009188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009580
98796726 - 98828294
31569