Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98840162_98840929_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

98840162 - 98840929

Intron Length:

768

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATACT

5'SS Class:

strong_major

3'SS Sequence:

ACGTGTTGTGAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

GTCTGTTTAAAA

Flanking Amino Acid:

VALLQAKDCPGIKNLMQKLF

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

86.8

27.8

Major BPS

83.9

0.84

73.9

41.3

Major PPT

56.1

0.14

1.2

43.2

Minor 5ss

37.7

-1.4

2.9

52.3

44.3

Minor BPS

54.1

0.13

1.9

64.9

41.7

Associated Gene:

Gene:

ORC3

Ensembl Gene ID:

ENSAPLG00000010933

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048083

98836564 - 98864665

28102

ENSAPLT00000011453

98836564 - 98864718

28155