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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98844639_98846494_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98844639 - 98846494
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAACG
Flanking Amino Acid:
SVQNFIKGFQLCIVEHFYTQ
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.4
0.89
0.7
88.2
29.1
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
69.6
0.48
1.6
74.82
36.8

Associated Gene:

Gene:
ORC3
Ensembl Gene ID:
ENSAPLG00000010933
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048083
98836564 - 98864665
28102
ENSAPLT00000011453
98836564 - 98864718
28155