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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98862371_98863443_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98862371 - 98863443
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AACGTGTTAAAT
Flanking Amino Acid:
RLINLVDWLEAFSTVVTAVE
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.5
0.78
0.7
77.5
31.2
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
45.3
-0.2
2.2
59.92
43.6

Associated Gene:

Gene:
ORC3
Ensembl Gene ID:
ENSAPLG00000010933
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011453
98836564 - 98864718
28155