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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99001603_99004903_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99001603 - 99004903
Intron Length:
3301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATCT
Flanking Amino Acid:
LEFGLCTVTCGIGIREILLM
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.4
0.55
1
75.7
27
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
68.4
0.66
1.7
88.82
36

Associated Gene:

Gene:
SPACA1
Ensembl Gene ID:
ENSAPLG00000026124
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026472
98997817 - 99017037
19221
ENSAPLT00000018204
98997817 - 99020384
22568