About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99005006_99005385_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99005006 - 99005385
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TACCTATTAAAA
Flanking Amino Acid:
EECHGPVDCGLGRPISENSK
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75.6
0.58
0.8
67.2
34.7
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
49.7
-0
1.7
60.44
38.7

Associated Gene:

Gene:
SPACA1
Ensembl Gene ID:
ENSAPLG00000026124
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026472
98997817 - 99017037
19221
ENSAPLT00000018204
98997817 - 99020384
22568