About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99012979_99016001_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
99012979 - 99016001
Intron Length:
3023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCCTTTGCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
ATTAAGAGAACC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.7
38.4
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
72.5
0.51
0.8
68.1
32.2
Minor 5ss
37.9
-1.4
2.7
47.5
36
Minor BPS
40.1
-0.7
2.3
57.04
40.6

Associated Gene:

Gene:
SPACA1
Ensembl Gene ID:
ENSAPLG00000026124
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026472
98997817 - 99017037
19221