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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99012979_99019134_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
99012979 - 99019134
Intron Length:
6156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TGTGTGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AAGACCTTGATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.7
38.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.9
0.56
1
68.1
42.3
Minor 5ss
37.9
-1.4
2.7
47.5
36
Minor BPS
63.6
0.51
1.3
70.91
40.1

Associated Gene:

Gene:
SPACA1
Ensembl Gene ID:
ENSAPLG00000026124
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018204
98997817 - 99020384
22568