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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99041367_99043210_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
99041367 - 99043210
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGTC
5'SS Class:
major
3'SS Sequence:
TTTCCCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTATCCTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.3
38.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.8
0.72
0.7
74.1
31
Minor 5ss
27.9
-2.5
3.5
32.4
42.7
Minor BPS
58.9
0.14
1.8
68.48
39.2

Associated Gene:

Gene:
CNR1
Ensembl Gene ID:
ENSAPLG00000000952
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000933
99039884 - 99043330
3447