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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99184838_99210962_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99184838 - 99210962
Intron Length:
26125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
NFDRPFAQIKVTKELKQYDN
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
78
32.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
40.4
-1.1
3.3
56.1
48.1
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
RNGTT
Ensembl Gene ID:
ENSAPLG00000014978
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015675
99182015 - 99364941
182927