Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99238893_99267644_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

99238893 - 99267644

Intron Length:

28752

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

TAATTTGCTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGCTTTTTAATT

Flanking Amino Acid:

VDGLIFQPTGKYKPGRCDDI

Intron Amino Acid Position:

450

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

75.5

40.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.9

0.61

Minor 5ss

38.7

-1.3

2.8

41.7

Minor BPS

72.1

0.77

1.1

79.54

37.3

Associated Gene:

Gene:

RNGTT

Ensembl Gene ID:

ENSAPLG00000014978

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015675

99182015 - 99364941

182927