About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99330990_99331797_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99330990 - 99331797
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGAGAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TATTGCAGAACA
Flanking Amino Acid:
QKCQQFCGWEGSGFPGAQPV
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
64
36.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
35.4
-1.7
3.3
37.9
47
Minor BPS
49.9
-0
2.1
70.91
40.6

Associated Gene:

Gene:
RNGTT
Ensembl Gene ID:
ENSAPLG00000014978
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015675
99182015 - 99364941
182927