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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99331908_99345735_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
99331908 - 99345735
Intron Length:
13828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTTTTG
5'SS Class:
weak_major
3'SS Sequence:
TATTTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
GKRRKERLKLGAIFLEGITV
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
66
40
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.3
0.73
0.8
82.2
34.2
Minor 5ss
50.5
0.02
2.4
63.7
43
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
RNGTT
Ensembl Gene ID:
ENSAPLG00000014978
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015675
99182015 - 99364941
182927