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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99353744_99353883_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99353744 - 99353883
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCATGTTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTGTCCTAACC
Flanking Amino Acid:
GIKYIKLQCKGHGECPTPEN
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
71.1
0.48
1
69.6
40.2
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
64.8
0.45
1.8
78.54
37

Associated Gene:

Gene:
RNGTT
Ensembl Gene ID:
ENSAPLG00000014978
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015675
99182015 - 99364941
182927