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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99353988_99360503_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99353988 - 99360503
Intron Length:
6516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TTTTAATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
MLSNYLKSLKVKMGLLVDLT
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84
0.77
0.8
82.3
34
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
RNGTT
Ensembl Gene ID:
ENSAPLG00000014978
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015675
99182015 - 99364941
182927