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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99418109_99419319_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99418109 - 99419319
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTTTGGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
AAATGTCTAACC
Flanking Amino Acid:
KAAALATGCRVEIKGGENDY
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
72
0.5
1
69.1
41.8
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
47.8
-0.1
2
59.66
39

Associated Gene:

Gene:
PM20D2
Ensembl Gene ID:
ENSAPLG00000015721
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046439
99410607 - 99423366
12760
ENSAPLT00000016382
99410607 - 99424386
13780