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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99423367_99424183_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99423367 - 99424183
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTTTTCCATA
Flanking Amino Acid:
NHTEQYTEAAGSQNAQFYAL
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
87.2
0.84
0.6
84.5
23.5
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
50.5
0.01
1.9
70.41
36.7

Associated Gene:

Gene:
PM20D2
Ensembl Gene ID:
ENSAPLG00000015721
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016382
99410607 - 99424386
13780