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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99484363_99486485_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99484363 - 99486485
Intron Length:
2123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
FPDGHVLYSMRITVTAMCNM
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.8
0.62
0.8
70.3
36.4
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
GABRR2
Ensembl Gene ID:
ENSAPLG00000015752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016415
99477791 - 99501172
23382