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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99489386_99496990_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99489386 - 99496990
Intron Length:
7605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AGTTATTTACAT
Flanking Amino Acid:
HDFTMRPAFGGPAIPVGVDV
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.9
0.67
0.8
73.1
31.5
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
49.3
0.02
1.9
69.47
41.1

Associated Gene:

Gene:
GABRR2
Ensembl Gene ID:
ENSAPLG00000015752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016415
99477791 - 99501172
23382