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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99504287_99509448_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99504287 - 99509448
Intron Length:
5162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGTCC
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAA
U12 Branch Point Sequence:
CTTGCTTCAACT
Flanking Amino Acid:
RAFQDPASAMSETQNSSAAS
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
61.9
37.4
Major BPS
60.4
0.26
1.3
65.6
41.4
Major PPT
93.2
0.97
0.6
92.1
18.5
Minor 5ss
44.2
-0.6
3
56.2
43.6
Minor BPS
63.7
0.51
1.7
79.65
42.8

Associated Gene:

Gene:
UBE2J1
Ensembl Gene ID:
ENSAPLG00000015959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016662
99504017 - 99517915
13899