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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99517045_99517727_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99517045 - 99517727
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTCCTTTAAAG
Flanking Amino Acid:
MKPPSIILLTANGRFEVGKK
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.4
41.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.5
0.62
1
78.2
27.9
Minor 5ss
34.3
-1.8
2.9
43
43.5
Minor BPS
63.9
0.3
1.5
65.96
41.8

Associated Gene:

Gene:
UBE2J1
Ensembl Gene ID:
ENSAPLG00000015959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020119
99504017 - 99517811
13795
ENSAPLT00000016662
99504017 - 99517915
13899