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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99543208_99545049_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99543208 - 99545049
Intron Length:
1842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TTTGTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTTATTAATA
Flanking Amino Acid:
FVREESFERKGLIDYNFHCF
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.5
0.73
0.7
78.1
30.8
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
68
0.56
1.5
75.76
35.9

Associated Gene:

Gene:
RRAGD
Ensembl Gene ID:
ENSAPLG00000016037
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016738
99543056 - 99559068
16013