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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99545199_99546831_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99545199 - 99546831
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTGTTTGAATA
Flanking Amino Acid:
DVVIDISCIYGLKDDGSGTP
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
74.7
0.56
0.8
71.3
35.4
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
59.9
0.31
1.5
71.08
35.7

Associated Gene:

Gene:
RRAGD
Ensembl Gene ID:
ENSAPLG00000016037
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016738
99543056 - 99559068
16013