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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99546975_99551884_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99546975 - 99551884
Intron Length:
4910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
LENLLNIFISNSGIEKAFLF
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
83
0.74
0.8
81.2
29.3
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
RRAGD
Ensembl Gene ID:
ENSAPLG00000016037
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016738
99543056 - 99559068
16013