About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99552000_99553016_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99552000 - 99553016
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAA
U12 Branch Point Sequence:
TGTGGCTAAAAG
Flanking Amino Acid:
ADAGLEKIHLSFYLTSIYDH
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
52.4
0.06
1.3
55.6
40.2
Major PPT
87.9
0.85
0.8
80.3
37.3
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
44.2
-0.5
2.2
52.97
47.4

Associated Gene:

Gene:
RRAGD
Ensembl Gene ID:
ENSAPLG00000016037
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016738
99543056 - 99559068
16013