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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99553217_99553639_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99553217 - 99553639
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTTCATT
Flanking Amino Acid:
GALIFVIDSQDDYMEALARL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.9
0.63
0.8
78.8
28.4
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
79.8
1.02
1.6
95.75
31

Associated Gene:

Gene:
RRAGD
Ensembl Gene ID:
ENSAPLG00000016037
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016738
99543056 - 99559068
16013