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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99553936_99558772_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99553936 - 99558772
Intron Length:
4837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TGATTTTATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTTGCATGATT
Flanking Amino Acid:
GDAESGGDEAFLDFNDPFST
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
62.4
37.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
79.3
0.66
1
77.8
40.4
Minor 5ss
30.5
-2.2
3.1
36.8
40.4
Minor BPS
51.9
0.14
2.1
75.68
41.6

Associated Gene:

Gene:
RRAGD
Ensembl Gene ID:
ENSAPLG00000016037
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016738
99543056 - 99559068
16013