Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_995732_996952_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

995732 - 996952

Intron Length:

1221

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTACGTATA

5'SS Class:

major

3'SS Sequence:

GTTTTCAAACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

ATGTTTTCAAAC

Flanking Amino Acid:

NIAEEREQQKDFVPLYQDFE

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

33.2

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

67.9

0.4

1.1

61.1

43.8

Minor 5ss

-1.1

50.9

Minor BPS

51.7

0.03

1.6

61.68

37.7

Associated Gene:

Gene:

SPTLC3

Ensembl Gene ID:

ENSAPLG00000011146

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011600

954416 - 1047987

93572

ENSAPLT00000048085

964035 - 1047987

83953

ENSAPLT00000021081

964035 - 1045732

81698