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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99638861_99646799_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99638861 - 99646799
Intron Length:
7939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
CTTCTTTTCACA
Flanking Amino Acid:
AGCDLDIQDDGDQTALHRAA
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
87.1
0.83
0.7
82.8
25.8
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
54.9
0.15
1.8
67.58
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016201
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016907
99631454 - 99656946
25493