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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99652577_99652790_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99652577 - 99652790
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTGTTCTGAAGG
Flanking Amino Acid:
AGADTAVVNNAGQTPLEVAR
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
90.1
0.9
0.6
89
20
Minor 5ss
36.5
-1.5
2.7
41.8
38.1
Minor BPS
49.8
-0.1
1.9
56.42
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016201
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016907
99631454 - 99656946
25493