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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99655889_99656474_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99655889 - 99656474
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTAAAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
GQMESKTQHQLRVLDKLMAE
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.6
27.5
Major BPS
52
0.05
1.3
61.2
42
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
38.8
-1.3
3.1
49.9
40.5
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029489
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019749
99655844 - 99660035
4192