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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99656589_99658271_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99656589 - 99658271
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GATCCTCTAACG
Flanking Amino Acid:
LEKNEGEKRQMSLVDELKTW
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.4
43.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
81.2
0.7
0.7
75.6
26.6
Minor 5ss
35.3
-1.7
3.8
55.3
48.9
Minor BPS
53.6
-0
1.8
60.02
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029489
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019749
99655844 - 99660035
4192