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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99658395_99659483_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
99658395 - 99659483
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCTGAGACC
5'SS Class:
weak_major
3'SS Sequence:
TGTAGGTGCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GCTTTTCTAACC
Flanking Amino Acid:
KSTLSTCESLQQLMAAGPAA
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.3
57.6
38
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
45.4
-0.2
1.7
45.1
45.7
Minor 5ss
17.7
-3.7
3.7
23.6
30
Minor BPS
58
0.23
1.7
67.01
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029489
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019749
99655844 - 99660035
4192