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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_99665115_99665340_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99665115 - 99665340
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGCG
5'SS Class:
major
3'SS Sequence:
CTCCGTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GCGGGCTGACGG
Flanking Amino Acid:
LPPGALTLKQFLRRQQVLQL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
57.6
41.5
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
74.5
0.55
0.9
67.8
37.6
Minor 5ss
23
-3.1
3.4
29.5
43.4
Minor BPS
32.6
-1.4
2.1
27.77
42

Associated Gene:

Gene:
LYRM2
Ensembl Gene ID:
ENSAPLG00000025978
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019207
99664851 - 99665385
535